\documentclass{book}

\usepackage{biblatex}
\usepackage{textcomp}
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\usepackage{rotating}
%\usepackage{caption}
\usepackage{graphicx}
\usepackage{epstopdf}
\usepackage{listings}
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\makeindex 
%\bibliographystyle{ieee}
\bibliography{Master}

\begin{document}
%\maketitle

\newcommand{\HRule}{\rule{\linewidth}{0.5mm}}

\begin{titlepage}
\begin{center}
\includegraphics[width=73mm]{figures/uglo.eps} \\[0.5cm]
\paragraph*{}

\textsc{\Large Department of Informatics}\\[0.5cm]
\Large Master's thesis \\[0.4cm]
\HRule \\[0.4cm]
{ \huge \bfseries HP LIMS:\\ Streamlining the handling of\\ heavy peptides at PROBE}\\[0.5cm]
\HRule \\[1.0cm]

\emph{By John Ring\o}\\
%\emph{Supervised by Ingvar Eidhammer and Harald Barsnes}\\

\paragraph*{}
\end{center}
\vfill
\begin{center}
{\large June, 2012}
\end{center}
\end{titlepage}

\newpage{}
\thispagestyle{empty}
\mbox{}
\newpage{}

\pagestyle{headings}
\setcounter{page}{1}
\pagenumbering{roman}

% page i %
\input{Abstract.tex}
\cleardoublepage
\input{Acknowledgements.tex}
\newpage

% page ii %
\tableofcontents
\newpage

% page iii %
\listoffigures
\newpage

% page iv %
\lstlistoflistings
\newpage

% set the page numbers to be arabic, starting at page 1 %
\setcounter{page}{1}
\pagenumbering{arabic}

\input{Proteins.tex}
\input{ExistingSystem.tex}
\input{Goals.tex}
\input{LIMS.tex}
\input{RichInternetApplications.tex}
\input{Tools.tex}
\input{Implementation.tex}
\input{HplimsInUse.tex}
\input{Conclusion.tex}

%\bibliographystyle{wiley}

\printbibliography

\cleardoublepage
\addcontentsline{toc}{chapter}{Index}
\printindex
%\input{Master.ind}

\end{document}
